Does Ecommerce tracking matters on URL in Google analytics?

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Hi Everyone,

I'm working for a ecommerce store, currently it is on domain 'store.example.com', client wants to switch it on 'example.com/store'.

My question is will I get the same data in my analytics account on Ecommerce tab as I am getting now OR there would be any discrepency, and can I fix it? Is URL structure matters for ecommerce tracking?

Thanks in advance.